BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BA0AB018B02SP1|AL427256
(659 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1418 1216 0.0
>3x_Contig1418
Length = 8644
Score = 1216 bits (607), Expect = 0.0
Identities = 640/657 (97%), Gaps = 1/657 (0%)
Strand = Plus / Minus
Query: 4 caagtactccactacga-gnctaagtaccccaccactaagcctgaatatccaacgatgaa 62
||||||||||||||||| | |||||||||||||||||||||||||||||||||||| |||
Sbjct: 6973 caagtactccactacgaagtctaagtaccccaccactaagcctgaatatccaacgacgaa 6914
Query: 63 gttgnaatatccaacaaacaagactgagaccttgaccacgaagtctgaatatccaactac 122
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6913 gtctgaatatccaacaaacaagactgagaccttgaccacgaagtctgaatatccaactac 6854
Query: 123 gaagtctgaatatccatctaacaagactgagaccttaaccaccactgagggtaaaagcag 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6853 gaagtctgaatatccatctaacaagactgagaccttaaccaccactgagggtaaaagcag 6794
Query: 183 cattgaaatctccaccaaatacaaagttacatctaatgttacaaccagtcatcagactta 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6793 cattgaaatctccaccaaatacaaagttacatctaatgttacaaccagtcatcagactta 6734
Query: 243 caccgttacgtcggagattccttgcgaaactacttctgaggttccgacacattacaacaa 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6733 caccgttacgtcggagattccttgcgaaactacttctgaggttccgacacattacaacaa 6674
Query: 303 aacttccacttacccagctccaccaccacaccataacagtacctcttcttacccaatgcc 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6673 aacttccacttacccagctccaccaccacaccataacagtacctcttcttacccaatgcc 6614
Query: 363 accaaagacttatacctgggtttctaaaaacaaaactatcattactactactgactgtyc 422
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 6613 accaaagacttatacctgggtttctaaaaacaaaactatcattactactactgactgtcc 6554
Query: 423 aactactgawacaaaaccagttattcctaccgattatycaacaactgawaccaaaccggt 482
||||||||| ||||||||||||||||||||||||||| |||||||||| |||||||||||
Sbjct: 6553 aactactgaaacaaaaccagttattcctaccgattatccaacaactgaaaccaaaccggt 6494
Query: 483 aactactcatcaccttgccccaaccaatgawactaccccaatyccctacactgawaacgg 542
|||||||||||||||||||||||||||||| ||||||||||| ||||||||||| |||||
Sbjct: 6493 aactactcatcaccttgccccaaccaatgaaactaccccaatcccctacactgaaaacgg 6434
Query: 543 tgctggcattttggacagtwacattgtyggagccggtttagctgttgttggtgccatgtt 602
||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||
Sbjct: 6433 tgctggcattttggacagtaacattgtcggagccggtttagctgttgttggtgccatgtt 6374
Query: 603 gttatwagttgcaataacagctgcatgtgtatctgacacacatcttttctactatta 659
||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6373 gttataagtcgcaataacagctgcatgtgtatctgacacacatcttttctactatta 6317
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.39 0.713 1.32
Gapped
Lambda K H
1.39 0.713 1.32
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3282
Number of Sequences: 1807
Number of extensions: 3282
Number of successful extensions: 69
Number of sequences better than 1.0e-20: 1
length of query: 659
length of database: 10,358,551
effective HSP length: 16
effective length of query: 643
effective length of database: 10,329,639
effective search space: 6641957877
effective search space used: 6641957877
T: 0
A: 40
X1: 5 (10.0 bits)
X2: 14 (28.0 bits)
S1: 12 (24.5 bits)
S2: 50 (100.6 bits)